The Genpax platform delivers the most advanced and effective intelligence on pathogens in the global battle against infectious diseases.
Customer inputs:
-
The sequence file for analysis for a supported species
-
Basic sample metadata to support analysis and interpretation (anonymous)
-
Optional metadata (with controlled sharing or confidentiality)
-
Capabilities to correct or revise metadata, and to add to or replace sub-optimal sequence datasets
The platform:
-
Automated cloud-based delivery
-
Full SNP-resolution analysis
-
Fast turnaround, with comprehensive results within two hours, regardless of volumes or location
-
Fully comparable results, with each-to-every comparisons for the same species or sub-species over time and any number of locations
-
Data owned and access/sharing controlled by the user
-
For surveillance and research purposes only (unless otherwise specifically stated)
-
GDPR / data protection compliant
Genpax reporting:
-
Laboratory dashboard
-
Data entry for sample and batch information
-
Batch and sample reporting
-
Detailed QC reports to detect issues and optimize laboratory practices
-
​
-
Surveillance dashboard
-
Prioritized reporting of highly related strains within samples and to previously analyzed data for outbreak detection and probable transmission analysis
-
Interactive dendrograms to address potential transmission-linked clusters in detail
-
Optional user-definable additional metadata fields
-
Ability to distinguish same-patient recurrent or re-infection status
-
Inclusion of marker strains for clinically important clones, with the ability to add local marker strains for alert purposes
-
Warnings for sub-optimal sequence information
-
​
-
Clinical team reporting
-
Reporting can be filtered for specific clinical teams and ward-associated isolates
-
Individual sample reports to support management review by patient care teams
-